In this case, you will have to check for X11 clipboard support. The GUI version of Vim always has clipboard support. On Debian and Ubuntu, to obtain clipboard support install the packages vim-gtk or vim-gnome not vim-tiny. This provides the vimx command, which is a console version of Vim with Xclipboard support.
Or if you are running Debian only test on 7. I like aliasing Vim to vimx by adding this line to my. For X11 systems, though, they differ. Text selected, or otherwise highlighted in one X11 app is available in the selection buffer, and text explicitly copied or cut is available in the cut buffer. This works for all OSes only for gvim.
This should be documented as should workarounds.
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If you're having trouble with GVIM on Ubuntu, and it doesn't seem to be doing what everybody is saying it should, try closing it completely and reopening. It's supposed to "just work" in the case of copy-paste integration with the system clipboard, especially if you use GVIM's GUI buttons or menus. However, sometimes it just stops working, and you have to close and reopen. If for some reason your version of vim under Unix-like system has no support for clipboard, you can use a handy utility called xsel.
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Xsel lets you manipulate X selections check man xsel for more info. To work around the lack of clipboard I use following mappings:. Workspace Menu , Up: Using this menu you can have access to the list of packages and data-sets installed on your system and to the ones on CRAN or on the Bioconductor site. With the first two menus you can load and detach packages and data-set from the workspace. This opens a window with several columns displayed. On window closure, the checked packaged will be loaded and the unchecked ones if loaded will the detached not completely as on Mac OS X you cannot unload completely dynamic libraries.
You can than get or update packages CRAN either in binary or source format. In this case, you should always choose for the binary option. These binary packages work for sure! When you attempt to install packages from CRAN , R first tries to get a connection to the Internet to download the list of available packages. Than a window will open similar to the one in the package manager with the only difference that for each package there is also the information concerning the version of the package installed on your system if any and the version of the prebuilt package available on CRAN.
When you close the window, the select packages will be downloaded. The same strategy applies to the Bioconductor menu item, with some more options typical of the Bioconductor way of managing packages. For some reason it could happen that you have the package you want to install either in binary or source form on one of your local disks, or even a directory containing a package source. You can use the last menu to do the task of installing the package.
Having a package in a directory form usually applies to people that are developing packages themselves. For more information on this topic see also How to install packages. Packages Menu , Up: There are also interfaces to the R help and help. You can set several aspects of the R GUI via preferences. You can access the Preferences window via the Application menu when the R Console is open. Preferences , Up: Options are to open file in an editor or to source file.
Default is to source the file. The Default Library Paths section enables, on next start-up of R, to add a directory, e. The initial working directory section can be used to enforce the initial working directory. If no directory is specified, this directory is used as the default. The Change button allows to select a new directory. The Always apply selection will enforce the specified intial start-up directory. The history section controls reading of the history file on startup.
If selected, R will read history file on start-up. This field can be edited to allow selecting files starting with a period e. If you want the same history file regardless of your selected working directory, specify a fixed path e. The Default button will reset the history file name to its default value. The History handling area allows setting of the max number of entries to be kept in history, to remove duplicate entries, to cleanup history entries this is very useful to remove blank lines when submitting multiple lines using Command-Return and the strip comments before the entry is added to the history.
Syntax Colors , Previous: Startup , Up: If External editor is selected, allows specifying which external editor. That editor will be used for all editing functions. It runs as a separate application. Using an external editor means that R will never wait while editing e. Command-E and Command-Return like functionality would need to be implemented by other means, i. The external editor can be any application e. Console Colors , Previous: Editor Preferences , Up: Quartz window , Previous: Syntax Colors , Up: Console Colors , Up: On Unix systems a bug report can be generated using the function bug.
Alternatively the bug report can be submitted to the Web page at http: Before you file a bug report, please try to reproduce it using both R. APP and the console version of R if applicable. If the bug if R. Please do NOT forget to mention the exact R. APP version and include the output of sessionInfo. In any circumstances, in case of a crash, please report the crash. You can get this crash.
R and external applications , Previous: You have several options for installing new packages on your system.
We discuss here only the GUI interface to the standard R functions like install. For the R functions see the standard R documentation. Installation of packages , Previous: How to install packages , Up: How to install packages. You can also install packages from local files, either binary of source packages, as explained below. Otherwise you can use the appropriate R commands see install. Installation of source packages , Previous: Which kind of packages can I install using the GUI? R for Mac OS X recognizes packages in two forms: Binary packages are R packages in ready-to-use form, such that no additional tools are necessary for their use.
Binary packages are specific for a given R version and OS.
Additional tools may be necessary for that, see see Installation of source packages for details. For most users binary packages are sufficient if available and current. The latter two methods are common to all Unix systems and as such described in the general R documentation. In the following we will concentrate on using the Package Installer. Select the repository, package type binary or source and press Get List. This will connect to the repository through the Internet and a list all packages available for installation.
Paste from Clipboard to X11 on Mac
The list tells you if a package is already installed on your system, the version of the package available on CRAN and the version of the same package if already installed. You can use the search field to narrow the list of package to those matching your search criteria. Additionally you can use the search list menu to list only packages that are already installed on your system which is useful for comparing versions of available and installed packages.
Finally, you can filter down to packages that have been installed by a previous R version as to allow a simple upgrade. Select any package you want to install and press the Install button. You can follow the progress of the installation in the R Console. Once the required packages are installed, the list is re-loaded to reflect the versions of newly installed packages.
If you want to update all packages to the latest version, select the repository to use for the packages and press Update All. R will automatically determine the list of packages that can be updated and present you with a selection of packages to update. You can also download any other package from the Internet yourself and decide to install it from source.
In such case select one of the local entries in the top left list and press the Install button which is now enabled. Packages can also be installed from other repositories by selecting Other Repository source. Enter the repository URL in the adjacent field. Note that currently the Package Installer assumes that custom repositories maintain proper hierarchy for both source and binary packages the same way CRAN does when using Other Repository.
Where are the packages I've installed? Installation of packages , Up: Source packages which do not contain compiled code can with rare exceptions be installed with no additional tools. APP or command-line R.
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For R. APP you may need to add e. Installation of source packages , Up: The main library of packages is the one located inside the R. This library contains the packages base and recommended ones distributed along with R. Only administrators are allowed to install packages in this system-wide directory. Note that this directory is R -version-specific. The Package Installer performs installation to either place depending on the installation target setting.
The default for an admin users is to install packages system-wide, whereas the default for regular users is their personal library tree. If you use install. For default setup this means that the packages are installed according to the startup preference setting. You can check the current defaults by issuing. Quartz device , Previous: External editors , Previous: R and external applications , Up: R and external applications.
R has partial support for Apple-Scripts.
At the moment R can be invoked and asked to run commands from an AppleScript script. What follows is an example of script that interacts with R. It first invokes R and then sends commands to R with the cmd applescript command. In the above, cmd is the only applescript command in the R dictionary that is used to tell R to execute an R command in the R Console. The syntax is. Actually, the output of the command is not sent back to the application that is calling R but to the R Console directly. There are some issues. The first is that if R is still not running, it will take a while depending on how fast your machine is to startup.
In the meanwhile the script sends commands without waiting and it could happen that some commands are missed by R , i. The second issue, is that it could be that the applescript calls a bad version of R. This could happen if you have an old version of R for example the old Carbon R installed on your System. As an example, we report here a small script that asks R to source a file using a file dialog. Finder actions , Previous: AppleScript support , Up: R accepts the Apple Event command open.
This means than an external editor can communicate with R sending portions of R code to execute via files. External editors , Up: RData , the data is loaded in the workspace and every object with the same name in the workspace is overwritten without notice. Loading a data file is equivalent to the R command load. At the moment there is no control over the file types, i.
It is up to the user to do the right thing. The quartz device can be used from R. APP or a suitable build of R running at the Mac console. Where supported it is the default graphics device. Saving the image , Previous: Quartz device , Up: Quartz device. The quartz device allows for interaction. Edit Remove.
This bug affects 1 person. Also affects project? Bug Description. TJones teresa wrote on Yes, that was it. Thank you. Sorry for the trouble. See full activity log.